allign_CT¶

allign_CT(t1_path: str | PathLike, ct_path: str | PathLike, reg_affine=None) → SpatialImage[source][source]¶

Alligns a CT scan to a T1 scan

Parameters:

t1_path (PathLike) – The path to the T1 scan
ct_path (PathLike) – The path to the CT scan
reg_affine (np.ndarray, optional) – The affine to use for registration, by default None

Returns:

The alligned CT scan

Return type:

nib.spatialimages.SpatialImage